Trinity

Description

Trinity assembles transcript sequences from Illumina RNA-Seq data..

Modulefile

trinity

Documentation

Trinity homepage

Usage

Here is an example of a submission script:

#$ -cwd
#$ -pe openmp 4
#$ -l h_rt=1:0:0
#$ -l h_vmem=2G

module purge
module load bowtie/1.1.2 trinity

Trinity <options> --CPU $NSLOTS
align_and_estimate_abundance.pl <options>