- Description
- MIRA is a whole genome shotgun and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (the later at the moment only CCS and error-corrected CLR reads).
- Modulefile
mira- Documentation
- MIRA homepage
- Usage
- Here is an example of a single thread submission script:
#$ -cwd
#$ -l h_rt=01:00:00
module load mira
mira -DI:trt=$TMPDIR -GE:not=$NSLOTS -GE:amm=0 <other options>
- A section of the code can be run multithreaded. If you require this please try:
#$ -cwd
#$ -l h_rt=01:00:00
#$ -pe openmp 2
module load mira
mira -DI:trt=$TMPDIR -GE:not=$NSLOTS -GE:amm=0 <other options>