IQ-TREE

Description

A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood.

Modulefile

iqtree

Documentation

IQ-TREE homepage

Usage

Here is an example of a serial submission script:

#$ -cwd
#$ -l h_rt=1:0:0

module load iqtree
iqtree -s example.phy

Here is an example of an OpenMP job running on 4 cores:

#$ -cwd
#$ -l h_rt=1:0:0
#$ -pe openmp 4

module load iqtree
iqtree-omp -nt $NSLOTS -s example.phy