| Legacy documentation
This page describes a service provided by a retired ACENET system. Most ACENET services are currently provided by national systems, for which please visit https://docs.computecanada.ca.
- Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.
- Cufflinks homepage
- Here is an example of a submission script processing the test data from the Cufflinks website:
#$ -cwd #$ -l h_rt=01:00:00 #$ -pe openmp 2 module load python cufflinks cufflinks --num-threads $NSLOTS test_data.sam